fix more broken markdown links

We fix more markdown links in markdown files that refer to files
internally to the web site.

Added tmp tools to find and print various markdown links:

* `tmp/md-links.sh` - print all markdown links
* `tmp/md-token-links.sh` - print all markdown links that start with a **%%TOKEN%%**
* `tmp/md-local-links.sh` - print all markdown links to a local file
* `tmp/md-link-paths.sh` - print local file paths referenced in markdown links

Fixed a number of markdown formatting problems with `thanks-for-help.md`.
Fixed markdown links to files in `thanks-for-help.md`.  Improved
heading levels in `thanks-for-help.md`, and made entry sections consistent.

Changed all markdown links that end in "))" to end in a better way.

Explained in `markdown.md` why we are avoiding markdown links that
end in "))".

Ran `make www` to perform the above.

TODO: Fix stuff we broke by mistake doing the above.

TODO: Fix more broken markdown links.

2015/endoh1/index.html

@@ -461,7 +461,7 @@ detail.</p>
 <p>This program simulates the systems. The field consists of 128 x 128 cells.
 Each cell includes information of an amount of the two substances, and interacts
 with neighbor cells (in terms of <a href="https://en.wikipedia.org/wiki/Von_Neumann_neighborhood">von Neumann
-neighborhood</a>) in each frame.</p>
+neighborhood</a> lattice) in each frame.</p>
 <h3 id="configuration">Configuration</h3>
 <p>You can change the model, initial pattern, simulation speed, and color via macro
 definition.</p>