fix more broken markdown links

We fix more markdown links in markdown files that refer to files
internally to the web site.

Added tmp tools to find and print various markdown links:

* `tmp/md-links.sh` - print all markdown links
* `tmp/md-token-links.sh` - print all markdown links that start with a **%%TOKEN%%**
* `tmp/md-local-links.sh` - print all markdown links to a local file
* `tmp/md-link-paths.sh` - print local file paths referenced in markdown links

Fixed a number of markdown formatting problems with `thanks-for-help.md`.
Fixed markdown links to files in `thanks-for-help.md`.  Improved
heading levels in `thanks-for-help.md`, and made entry sections consistent.

Changed all markdown links that end in "))" to end in a better way.

Explained in `markdown.md` why we are avoiding markdown links that
end in "))".

Ran `make www` to perform the above.

TODO: Fix stuff we broke by mistake doing the above.

TODO: Fix more broken markdown links.

2015/schweikhardt/index.html

@@ -568,7 +568,7 @@ letter identifiers). Not the random kind, rather with a connection to
 the meaning of life, the universe and the rest. Enter amino acids! Among
 the myriad of possible amino acids there are 23 from which proteins are
 built. In biochemistry, each is assigned a TLI (see <a href="https://en.wikipedia.org/wiki/Proteinogenic_amino_acid">Proteinogenic amino
-acid</a>):</p>
+acid</a> for more info):</p>
 <pre><code>    ala Alanine
     cys Cysteine
     asp Aspartic acid