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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
<meta name="GENERATOR" content="mkd2html 2.1.5a DL=DISCOUNT">
<META HTTP-EQUIV="Content-Type" CONTENT="text/html; charset=utf-8">
<link rel="stylesheet"
type="text/css"
href="../hint.css">
<title>Best use of bioinformatics</title>
</head>
<body>
<h1>Best use of bioinformatics</h1>
<p>Yusuke Endoh<br>
<a href="&#x6d;&#x61;&#x69;&#108;&#x74;&#111;&#58;&#109;&#97;&#109;&#x65;&#64;&#x72;&#117;&#98;&#x79;&#x2d;&#108;&#97;&#x6e;&#103;&#x2e;&#x6f;&#x72;&#x67;">&#x6d;&#97;&#109;&#x65;&#x40;&#x72;&#117;&#x62;&#x79;&#45;&#108;&#x61;&#110;&#103;&#46;&#111;&#114;&#103;</a><br>
<a href="https://github.com/mame/">https://github.com/mame/</a></p>
<h2>Judges' comments:</h2>
<h3>To build:</h3>
<pre><code>make
</code></pre>
<h3>To run:</h3>
<pre><code>./prog &lt; input &gt; output
</code></pre>
<h3>Try:</h3>
<pre><code>echo Hello | ./prog
echo Hello | ./prog &gt; hello.c
make hello
./hello
</code></pre>
<h3>Selected Judges Remarks:</h3>
<p>If you look closely at the source, you will see code that appears
to puts C code that includes itself. How and why? Perhaps it is
in the DNA code of the code? Perhaps there are 23 reasons? :-)</p>
<h2>Author&rsquo;s comments:</h2>
<h3>Remarks</h3>
<p>This chromosome program synthesizes a double helix.
The helix can also be compiled as a C program.</p>
<p>Enjoy DNA programming!</p>
<h3>For more information / backgroud reading:</h3>
<ul>
<li><p>This program was inspired by Acme::DoubleHelix:
http://search.cpan.org/~xern/Acme-DoubleHelix-0.01/</p></li>
<li><p>The synthesized helix just includes the original program at the head.
Do you see how <code>prog.c</code> determines whether it was invoked as a standalone program or included as a header file?
Note that it does not use any gcc extension such as <code>__INCLUDE_LEVEL__</code>.</p></li>
<li><p>The synthesized helix of course follows the base-pairing rules for DNA:
A is bonding only to T, and C is bonding only to G.</p></li>
</ul>
<hr />
<TABLE><TR>
<TD><a rel="license" href="http://creativecommons.org/licenses/by-sa/3.0/"><img alt="Creative Commons License" style="border-width:0" src="http://i.creativecommons.org/l/by-sa/3.0/88x31.png" /></a></TD>
<TD><P>&copy; Copyright 1984-2015,
<A HREF="/judges.html">Leo Broukhis, Simon Cooper, Landon Curt Noll</A>
- All rights reserved<BR>
This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/3.0/">Creative Commons Attribution-ShareAlike 3.0 Unported License</a>.</P></TD>
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</body>
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