autopilot: parallelize betweenness centrality

This commit parallelizes betweenness centrality calculation, by
distributing the algo to N workers and creating partial results.
This commit is contained in:
Andras Banki-Horvath committed 2020-03-27 13:56:10 +01:00
1 parent 7e50997bb4
commit 608354032c
3 files changed
+136 -46

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+63 -10
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@@ -1,5 +1,10 @@
package autopilot
import (
"fmt"
"sync"
)
// stack is a simple int stack to help with readability of Brandes'
// betweenness centrality implementation below.
type stack struct {
@@ -50,6 +55,10 @@ func (q *queue) empty() bool {
// shortest paths starting or ending at that node. This is a useful metric
// to measure control of individual nodes over the whole network.
type BetweennessCentrality struct {
// workers number of goroutines are used to parallelize
// centrality calculation.
workers int
// centrality stores original (not normalized) centrality values for
// each node in the graph.
centrality map[NodeID]float64
@@ -62,8 +71,15 @@ type BetweennessCentrality struct {
}
// NewBetweennessCentralityMetric creates a new BetweennessCentrality instance.
func NewBetweennessCentralityMetric() *BetweennessCentrality {
return &BetweennessCentrality{}
// Users can specify the number of workers to use for calculating centrality.
func NewBetweennessCentralityMetric(workers int) (*BetweennessCentrality, error) {
// There should be at least one worker.
if workers < 1 {
return nil, fmt.Errorf("workers must be positive")
}
return &BetweennessCentrality{
workers: workers,
}, nil
}
// Name returns the name of the metric.
@@ -158,10 +174,47 @@ func (bc *BetweennessCentrality) Refresh(graph ChannelGraph) error {
return err
}
// TODO: parallelize updates to centrality.
centrality := make([]float64, len(cache.Nodes))
var wg sync.WaitGroup
work := make(chan int)
partials := make(chan []float64, bc.workers)
// Each worker will compute a partial result. This
// partial result is a sum of centrality updates on
// roughly N / workers nodes.
worker := func() {
defer wg.Done()
partial := make([]float64, len(cache.Nodes))
// Consume the next node, update centrality
// parital to avoid unnecessary synchronizaton.
for node := range work {
betweennessCentrality(cache, node, partial)
}
partials <- partial
}
// Now start the N workers.
wg.Add(bc.workers)
for i := 0; i < bc.workers; i++ {
go worker()
}
// Distribute work amongst workers Should be
// fair when graph is sufficiently large.
for node := range cache.Nodes {
betweennessCentrality(cache, node, centrality)
work <- node
}
close(work)
wg.Wait()
close(partials)
// Collect and sum partials for final result.
centrality := make([]float64, len(cache.Nodes))
for partial := range partials {
for i := 0; i < len(partial); i++ {
centrality[i] += partial[i]
}
}
// Get min/max to be able to normalize
@@ -169,11 +222,11 @@ func (bc *BetweennessCentrality) Refresh(graph ChannelGraph) error {
bc.min = 0
bc.max = 0
if len(centrality) > 0 {
for i := 1; i < len(centrality); i++ {
if centrality[i] < bc.min {
bc.min = centrality[i]
} else if centrality[i] > bc.max {
bc.max = centrality[i]
for _, v := range centrality {
if v < bc.min {
bc.min = v
} else if v > bc.max {
bc.max = v
}
}
}